add checkpoint and some run files

run/exp2.sh

+for idx in 1 2 3 4
+do
+    for nbCours in 105 #LATER 95 85 75 65 55 45 35
+    do
+	for i in 3 4 5
+	do
+	    for cbyTF in 5 6 7 8 9 10
+	    do
+		for maxCbyC in 7 #LATER 3 4 5 6 
+		do
+		    for maxPre in 2 #LATER 3 4 DONE 5
+		    do
+			for nbGen in 10000
+			do
+			    let "nbComps=$idx * ($nbCours/2)"
+			    let "maxCbyTF=$nbCours/$i"
+			    let "minCbyTF=$nbCours/10"
+			    if [ $minCbyTF -lt $cbyTF ]
+			    then
+				let "minCbyTF=$cbyTF"
+			    fi			
+			    RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${minCbyTF}_${maxCbyTF}_${nbGen}"
+			    mkdir $RESDIR	    
+			    for run in 30
+			    do
+				let "nbComps=$idx * ($nbCours/2)"
+				let "maxCbyTF=$nbCours/$i"
+				let "minCbyTF=$nbCours/10"
+				if [ $minCbyTF -lt $cbyTF ]
+				then
+				    let "minCbyTF=$cbyTF"
+				fi
+				RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${minCbyTF}_${maxCbyTF}_${nbGen}"
+				
+				sbatch --array=1-${run} --job-name=${RESDIR} --output=${RESDIR}.out --export=C=$nbCours,c=$nbComps,R=$maxCbyC,Q=$maxPre,A=$cbyTF,n=$minCbyTF,N=$maxCbyTF,r=1,q=0,O=$RESDIR,B=20,x=0.75,X=0.75,F=3,G=$nbGen job.sh
+				echo "-C=${nbCours} -c=${nbComps} -R=${maxCbyC} -Q=${maxPre} -A=${cbyTF} -n=${minCbyTF} -N=${maxCbyTF} -r=1 -q=0" >> case
+			    done
+			done
+		    done
+		done
+	    done
+	done
+    done
+done

run/exp3.sh

+#
+for nbCours in 55 #LATER 95 85 75 65 55 45 35
+do
+    for i in 3 #4 5
+    do
+	for cbyTF in 6 #6 7 8 9 10
+	do
+	    for maxCbyC in 5 #LATER 3 4 5 6 
+	    do
+		for maxPre in 3 #LATER 2 3 4
+		do
+		    for nbGen in 10000
+		    do
+			nbComps=75
+			RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${nbGen}"
+			mkdir $RESDIR	    
+			for run in 30
+			do
+			    nbComps=75
+			    minCbyTF=7
+			    maxCbyTF=15
+			    RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${nbGen}"
+			    
+			    sbatch --array=1-${run} --job-name=${RESDIR} --output=${RESDIR}.out --export=C=$nbCours,c=$nbComps,R=$maxCbyC,Q=$maxPre,A=$cbyTF,n=$minCbyTF,N=$maxCbyTF,r=1,q=0,O=$RESDIR,B=50,x=0.75,X=0.75,F=3,G=$nbGen job.sh
+			    echo "-C=${nbCours} -c=${nbComps} -R=${maxCbyC} -Q=${maxPre} -A=${cbyTF} -n=${minCbyTF} -N=${maxCbyTF} -r=1 -q=0" >> case
+			done
+		    done
+		done
+	    done
+	done
+    done
+done

run/exp4.sh

+#
+for nbCours in 105 #LATER 95 85 75 65 55 45 35
+do
+    for cbyTF in 9 #6 7 8 9 10
+    do
+	for maxCbyC in 5 #LATER 3 4 5 6 
+	do
+	    for maxPre in 3 #LATER 2 3 4
+	    do
+		for nbGen in 100000
+		do
+		    nbComps=210
+		    RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${nbGen}"
+		    mkdir $RESDIR	    
+		    for run in 30
+		    do
+			nbComps=210
+			minCbyTF=10
+			maxCbyTF=21
+			RESDIR="../results/${nbCours}_${nbComps}_${maxCbyC}_${maxPre}_${cbyTF}_${nbGen}"
+			
+			sbatch --array=1-${run} --job-name=${RESDIR} --output=${RESDIR}.out --export=C=$nbCours,c=$nbComps,R=$maxCbyC,Q=$maxPre,A=$cbyTF,n=$minCbyTF,N=$maxCbyTF,r=1,q=0,O=$RESDIR,B=50,x=0.75,X=0.75,F=3,G=$nbGen job.sh
+			echo "-C=${nbCours} -c=${nbComps} -R=${maxCbyC} -Q=${maxPre} -A=${cbyTF} -n=${minCbyTF} -N=${maxCbyTF} -r=1 -q=0" >> case
+		    done
+		done
+	    done
+	done
+    done
+done

run/job2.sh

+#!/bin/bash
+#SBATCH -o main.out
+#SBATCH -N 1
+#SBATCH -n 1
+#SBATCH --mem=4G
+#SBATCH -p defq
+
+/home/jeremie.humeau/private/gitProject/csdvp-evolutionary-algorithm-optimization/build/application/ceao2 -G=10000 -P=100 -S=1 -C=105 -c=104 -R=7 -Q=5 -A=7 --outputfile=./TFtest -n=10 -N=25 -r=1 -q=0 -B=20 -x=0.75 -X=0.75 -F=3 -T=10
+
+
+exit 0

src/model/ea/bestFitStat.h

+#ifndef SRC_MODEL_EA_BESTFITSTAT_H_
+#define SRC_MODEL_EA_BESTFITSTAT_H_
+
+#include <eo>
+#include <fstream>
+#include <iostream>
+#include "cursus.h"
+
+template <class EOT>
+class bestFitStat: public eoStat<EOT, typename EOT::Fitness>
+{
+ public:
+  
+  typedef typename EOT::Fitness Fitness;
+
+ bestFitStat(int _interval, std::string _filename, std::string _description="best "):eoStat<EOT, Fitness>(Fitness(), _description), interval(_interval),filename(_filename){
+    cpt=0;
+  }
+
+  void operator()(const eoPop<EOT>& _pop){
+    if((cpt%interval)==0){
+      std::ofstream outputfile(filename.c_str(), std::ios::app);
+      outputfile << cpt << ":\t" << std::endl;
+      _pop.best_element().printOn(outputfile);
+      outputfile << std::endl;
+      outputfile.close();
+    }
+    cpt++;
+  }
+
+  virtual void lastCall(eoPop<EOT>& _pop){
+    std::ofstream outputfile(filename.c_str(), std::ios::app);
+    outputfile << cpt << ":\t" << std::endl;
+    _pop.best_element().printOn(outputfile);
+    outputfile << std::endl;
+    outputfile.close();
+  }
+  
+  int interval;
+  std::string filename;
+  int cpt;
+};
+
+#endif // SRC_MODEL_EA_BESTFITSTAT_H_